Cech, T. R. & Steitz, J. A. The noncoding RNA revolution—trashing old rules to forge new ones. Cell 157, 77–94 (2014).
Battich, N., Stoeger, T. & Pelkmans, L. Image-based transcriptomics in thousands of single human cells at single-molecule resolution. Nat. Methods 10, 1127–1133 (2013).
Wang, K. C. & Chang, H. Y. Molecular mechanisms of long noncoding RNAs. Mol. Cell 43, 904–914 (2011).
Buxbaum, A. R., Haimovich, G. & Singer, R. H. In the right place at the right time: visualizing and understanding mRNA localization. Nat. Rev. Mol. Cell Biol. 16, 95–109 (2015).
Jaschke, A. Genetically encoded RNA photoswitches as tools for the control of gene expression. FEBS Lett. 586, 2106–2111 (2012).
You, M. & Jaffrey, S. R. Designing optogenetically controlled RNA for regulating biological systems. Ann. N.Y. Acad. Sci. 1352, 13–19 (2015).
Tischer, D. & Weiner, O. D. Illuminating cell signalling with optogenetic tools. Nat. Rev. Mol. Cell Biol. 15, 551–558 (2014).
Zhang, L., Chen, C., Fan, X. & Tang, X. Photomodulating gene expression by using caged siRNAs with single-aptamer modification. Chembiochem 19, 1259–1263 (2018).
Zhang, L. et al. Caged circular siRNAs for photomodulation of gene expression in cells and mice. Chem. Sci. 9, 44–51 (2018).
Wu, L. et al. Caged circular antisense oligonucleotides for photomodulation of RNA digestion and gene expression in cells. Nucleic Acids Res. 41, 677–686 (2013).
Ando, H., Furuta, T., Tsien, R. Y. & Okamoto, H. Photo-mediated gene activation using caged RNA/DNA in zebrafish embryos. Nat. Genet. 28, 317–325 (2001).
Ando, H., Furuta, T. & Okamoto, H. Photo-mediated gene activation by using caged mRNA in zebrafish embryos. Methods Cell. Biol. 77, 159–171 (2004).
Chaulk, S. G. & MacMillan, A. M. Caged RNA: photo-control of a ribozyme reaction. Nucleic Acids Res. 26, 3173–3178 (1998).
Zhou, W. et al. Spatiotemporal control of CRISPR/Cas9 function in cells and zebrafish using light-activated guide RNA. Angew. Chem. Int. Ed. Engl. 59, 8998–9003 (2020).
Wang, P. et al. Mapping spatial transcriptome with light-activated proximity-dependent RNA labeling. Nat. Chem. Biol. 15, 1110–1119 (2019).
Benhalevy, D., Anastasakis, D. G. & Hafner, M. Proximity-CLIP provides a snapshot of protein-occupied RNA elements in subcellular compartments. Nat. Methods 15, 1074–1082 (2018).
Gonzaga, E. R. Role of UV light in photodamage, skin aging, and skin cancer: importance of photoprotection. Am. J. Clin. Dermatol. 10, 19–24 (2009).
Kawano, F., Shi, F. & Yazawa, M. Optogenetics: switching with red and blue. Nat. Chem. Biol. 13, 573–574 (2017).
Pichon, X. et al. RNA binding protein/RNA element interactions and the control of translation. Curr. Protein Pept. Sci. 13, 294–304 (2012).
Abil, Z., Denard, C. A. & Zhao, H. Modular assembly of designer PUF proteins for specific post-transcriptional regulation of endogenous RNA. J. Biol. Eng. 8, 7 (2014).
Weber, A. M. et al. A blue light receptor that mediates RNA binding and translational regulation. Nat. Chem. Biol. 15, 1085–1092 (2019).
Yamada, M., Nagasaki, S. C., Ozawa, T. & Imayoshi, I. Light-mediated control of gene expression in mammalian cells. Neurosci. Res. 152, 66–77 (2020).
Deisseroth, K. Optogenetics: 10 years of microbial opsins in neuroscience. Nat. Neurosci. 18, 1213–1225 (2015).
Xu, X. et al. A single-component optogenetic system allows stringent switch of gene expression in yeast cells. ACS Synth. Biol. 7, 2045–2053 (2018).
Chen, X. et al. An extraordinary stringent and sensitive light-switchable gene expression system for bacterial cells. Cell Res. 26, 854–857 (2016).
Wang, X., Chen, X. & Yang, Y. Spatiotemporal control of gene expression by a light-switchable transgene system. Nat. Methods 9, 266–269 (2012).
Li, X. et al. A single-component light sensor system allows highly tunable and direct activation of gene expression in bacterial cells. Nucleic Acids Res. 48, e33 (2020).
Motta-Mena, L. B. et al. An optogenetic gene expression system with rapid activation and deactivation kinetics. Nat. Chem. Biol. 10, 196–202 (2014).
Chen, X. et al. Synthetic dual-input mammalian genetic circuits enable tunable and stringent transcription control by chemical and light. Nucleic Acids Res. 44, 2677–2690 (2016).
Graille, M. et al. Activation of the LicT transcriptional antiterminator involves a domain swing/lock mechanism provoking massive structural changes. J. Biol. Chem. 280, 14780–14789 (2005).
Zoltowski, B. D. et al. Conformational switching in the fungal light sensor Vivid. Science 316, 1054–1057 (2007).
van Tilbeurgh, H., Le Coq, D. & Declerck, N. Crystal structure of an activated form of the PTS regulation domain from the LicT transcriptional antiterminator. EMBO J. 20, 3789–3799 (2001).
Lukinavicius, G. et al. A near-infrared fluorophore for live-cell super-resolution microscopy of cellular proteins. Nat. Chem. 5, 132–139 (2013).
Mie, M., Naoki, T., Uchida, K. & Kobatake, E. Development of a split SNAP-tag protein complementation assay for visualization of protein-protein interactions in living cells. Analyst 137, 4760–4765 (2012).
Yang, Y., Declerck, N., Manival, X., Aymerich, S. & Kochoyan, M. Solution structure of the LicT–RNA antitermination complex: CAT clamping RAT. EMBO J. 21, 1987–1997 (2002).
Wei, H. & Wang, Z. Engineering RNA-binding proteins with diverse activities. Wiley Interdiscip. Rev. RNA 6, 597–613 (2015).
Zoltowski, B. D., Vaccaro, B. & Crane, B. R. Mechanism-based tuning of a LOV domain photoreceptor. Nat. Chem. Biol. 5, 827–834 (2009).
Chen, X. et al. Visualizing RNA dynamics in live cells with bright and stable fluorescent RNAs. Nat. Biotechnol. 37, 1287–1293 (2019).
Zhao, Y. Y. et al. Expanding RNA binding specificity and affinity of engineered PUF domains. Nucleic Acids Res. 46, 4771–4782 (2018).
Gross, J. D., Matsuo, H., Fletcher, M., Sachs, A. B. & Wagner, G. Interactions of the eukaryotic translation initiation factor eIF4E. Cold Spring Harb. Symp. Quant. Biol. 66, 397–402 (2001).
Ulyanova, V., Vershinina, V. & Ilinskaya, O. Barnase and binase: twins with distinct fates. FEBS J. 278, 3633–3643 (2011).
Choudhury, R., Tsai, Y. S., Dominguez, D., Wang, Y. & Wang, Z. Engineering RNA endonucleases with customized sequence specificities. Nat. Commun. 3, 1147 (2012).
Knott, G. J. & Doudna, J. A. CRISPR–Cas guides the future of genetic engineering. Science 361, 866–869 (2018).
Konermann, S. et al. Genome-scale transcriptional activation by an engineered CRISPR–Cas9 complex. Nature 517, 583–588 (2015).
Nihongaki, Y. et al. CRISPR–Cas9-based photoactivatable transcription systems to induce neuronal differentiation. Nat. Methods 14, 963–966 (2017).
Zalatan, J. G. et al. Engineering complex synthetic transcriptional programs with CRISPR RNA scaffolds. Cell 160, 339–350 (2015).
Ma, H. et al. CRISPR-Sirius: RNA scaffolds for signal amplification in genome imaging. Nat. Methods 15, 928–931 (2018).
Qin, P. et al. Live cell imaging of low- and non-repetitive chromosome loci using CRISPR–Cas9. Nat. Commun. 8, 14725 (2017).
Ma, H. et al. Multiplexed labeling of genomic loci with dCas9 and engineered sgRNAs using CRISPRainbow. Nat. Biotechnol. 34, 528–530 (2016).
Shao, S. et al. Long-term dual-color tracking of genomic loci by modified sgRNAs of the CRISPR/Cas9 system. Nucleic Acids Res. 44, e86 (2016).
Chavez, A. et al. Highly efficient Cas9-mediated transcriptional programming. Nat. Methods 12, 326–328 (2015).
Bubeck, F. et al. Engineered anti-CRISPR proteins for optogenetic control of CRISPR–Cas9. Nat. Methods 15, 924–927 (2018).
Nihongaki, Y., Yamamoto, S., Kawano, F., Suzuki, H. & Sato, M. CRISPR–Cas9-based photoactivatable transcription system. Chem. Biol. 22, 169–174 (2015).
Nihongaki, Y., Otabe, T., Ueda, Y. & Sato, M. A split CRISPR–Cpf1 platform for inducible genome editing and gene activation. Nat. Chem. Biol. 15, 882–888 (2019).
Ash, C., Dubec, M., Donne, K. & Bashford, T. Effect of wavelength and beam width on penetration in light-tissue interaction using computational methods. Lasers Med. Sci. 32, 1909–1918 (2017).
Polstein, L. R. & Gersbach, C. A. A light-inducible CRISPR–Cas9 system for control of endogenous gene activation. Nat. Chem. Biol. 11, 198–200 (2015).
Nihongaki, Y., Kawano, F., Nakajima, T. & Sato, M. Photoactivatable CRISPR–Cas9 for optogenetic genome editing. Nat. Biotechnol. 33, 755–760 (2015).
Richter, F. et al. Engineering of temperature- and light-switchable Cas9 variants. Nucleic Acids Res. 44, 10003–10014 (2016).
Zhou, X. X. et al. A single-chain photoswitchable CRISPR–Cas9 architecture for light-inducible gene editing and transcription. ACS Chem. Biol. 13, 443–448 (2018).
Tanenbaum, M. E., Gilbert, L. A., Qi, L. S., Weissman, J. S. & Vale, R. D. A protein-tagging system for signal amplification in gene expression and fluorescence imaging. Cell 159, 635–646 (2014).
Boersma, S. et al. Multi-color single-molecule imaging uncovers extensive heterogeneity in mRNA decoding. Cell 178, 458–472 (2019).
Song, W., Strack, R. L. & Jaffrey, S. R. Imaging bacterial protein expression using genetically encoded RNA sensors. Nat. Methods 10, 873–875 (2013).
Paige, J. S., Nguyen-Duc, T., Song, W. & Jaffrey, S. R. Fluorescence imaging of cellular metabolites with RNA. Science 335, 1194 (2012).
Liu, Y. et al. Directing cellular information flow via CRISPR signal conductors. Nat. Methods 13, 938–944 (2016).
Xu, X. & Qi, L. S. A CRISPR–dCas toolbox for genetic engineering and synthetic biology. J. Mol. Biol. 431, 34–47 (2019).
Datsenko, K. A. & Wanner, B. L. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl Acad. Sci. USA 97, 6640–6645 (2000).
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